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UF HPC Tips and Scripts – The Kawahara Lab

https://www.floridamuseum.ufl.edu/kawahara-lab/uf-hpc-tips-and-scripts/

Guide and scripts for UF cluster programs By Jesse Breinholt, Kawahara Lab ExaML Guide ExaML module must be run on the new hypergator cluster: Step 1: Generate starting tree using raxml, I generally do this interactively on the test nodes as it takes only a few minutes as follows. ssh usern
username/dirwhereyouplacedyourfiles module load raxml raxmlHPC-PTHREADS-SSE3 -y -m model

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Genome-wide DNA methylation dynamics following recent polyploidy in the allotetraploid Tragopogon miscellus (Asteraceae) – Laboratory of Molecular Systematics & Evolutionary Genetics

https://www.floridamuseum.ufl.edu/soltis-lab/2024/05/08/genome-wide-dna-methylation-dynamics-following-recent-polyploidy-in-the-allotetraploid-tragopogon-miscellus-asteraceae/

Shan, S., M. A. Gitzendanner, J. L. Boatwright, J. P. Spoelhof, C. L. Ethridge, L. Ji, X. Liu, P. S. Soltis, R. J. Schmitz, and D. E. Soltis. 2024. Genome-wide DNA methylation dynamics following recent polyploidy in the allotetraploid Tragopogon miscellus (Asteraceae). New Phytologist 242:1363–1376.
Here, we use Tragopogon (Asteraceae) as a model system to discover patterns and

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Florida’s Environment: 10 Stories to Watch for May – Thompson Earth Systems Institute

https://www.floridamuseum.ufl.edu/earth-systems/blog/floridas-environment-10-stories-to-watch-for-may-3/

Dozens of Eastern indigo snakes have been released in Florida as part of the Nature Conservancy’s program to reintroduce the rare native species to its historical habitat. Eastern indigo snakes prey on venomous snakes, but they are nonvenomous themselves and are not aggressive when approached. They
University and the University of South Florida, have developed a next-day prediction model

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Bat Dispersal in the Bahamas – Research News

https://www.floridamuseum.ufl.edu/science/bat-dispersal-in-the-bahamas/

University of Florida graduate student Kelly Speer discusses her research using DNA differences to learn about bat populations in the Caribbean, and how climate and sea level changes affect population dispersal and movements. Assessing the movement of bats will also inform us about the movements of
Bats are a really good model for looking at movement because they’re such good dispersers

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Education & Career – Andrei Sourakov | Lepidoptera Collections Coordinator

https://www.floridamuseum.ufl.edu/andrei-sourakov/education-career/

Sourakov volunteered at the American Museum of Natural History in 1991, where he received additional training in Lepidoptera taxonomy and worked on his first taxonomic revision. He received his M.S. (1994) and Ph. D. (1997) in Entomology from the University of Florida. After his postdoc terms
Using Lepidoptera as a model group, he tries to answer broader biological questions

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North America’s rarest snake found biting off more than it could chew – Research News

https://www.floridamuseum.ufl.edu/science/north-americas-rarest-snake-found-biting-off-more-than-it-could-chew/

North America’s rarest snake, Tantilla oolitica (rim rock crowned snake), was recently spotted in a park in the Florida Keys after a four-year hiatus. While this would normally be cause for celebration among conservationists, the snake sighting was more a source of incredulous awe than anything else
to enhance the contrast of its internal tissues and constructed a fine-scaled 3D model

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Verity L. Mathis – People

https://www.floridamuseum.ufl.edu/people/verity-mathis/

Contact Florida Museum of Natural History Dickinson Hall 1659 Museum Road Gainesville, Florida 32611-7800 352-273-2114 vmathis@flmnh.ufl.edu Collection Mammalogy Education Ph.D., Biological Sciences, Louisiana State University M.S., Wildlife Sciences, New Mexico State University B.S., Zo
broadly include speciation, systematics, phylogeography, and biogeography in non-model

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